summary()) could be very
wide (annoying in Sweave output), now print.renewal() and
print.summary.renewal() obey 'width' when possible (see helper function
.deparseCall()).print.summary.renewal() when failure to compute variance
or residuals.moved lattice and RColorBrewer to Suggests.
declared that update.renewal is an S3 method (the roxygen @export
directive was missing).
in DESCRIPTION, corrected a URL that was accidentally pointing to another package.
changed the names of link functions imported from package VGAM to names ending with 'link', since the old names have been removed in VGAM v1.1-14. This is an internal change in the code of the package, the link functions providd by package Countr remain the same.
added missing (roxygen) export directive for the modelMat method for
predict.
reinstated bivariate distributions. This was done on users' request but without careful verification if changes in the package done since they were removed cause problems.
a missing '@' symbol had caused roxygen to generate items for 'inheritParams' in the arguments section of a couple of Rd files.
fixed new warnings from the C++ compiler like ' RcppExports.cpp:528:18: warning: format string is not a string literal (potentially insecure) [-Wformat-security]'.
now import selectively from 'dplyr'. Also, see the 'todo' note in 'Countr-package.R'.
several documentation files had duplicated descriptions of some arguments.
changed several instances of class(...) = "..." to use inherits.
changed http://www.football-data.co.uk/englandm.php to https://www.football-data.co.uk to fix a NOTE from R check.
switched from travisci to github actions.
changed maintainer.
fixed a doi reference in DESCRIPTION to be in proper format.
consolidation after the refactoring of the repository.
created pkgdown website.
dealt with 'xtimes' problem on Windows (issue#1: the data frame
returned by optimx_2018-7.10 on Windows has a column xtime not
xtimes).
a number of updates in connection of the forthcoming release of the JSS paper.
small adjustments before submission.
renamed 'Countr.R' to 'Countr-package.R'.
updated the main vignette with the accepted version of the JSS paper.
Formula. The syntax with argument anc remains
available.se.coef.renewal() now prints a slightly more informative message without
raising a warning.type = "prob" for residuals - changes in residuals.renewal,
.objectiveFunction and renewal(). Comments and asome examples are
temporarily put in the documentation of renewal()..objectiveFunction(). It is now passed on to
probability computing functions to specify whether logged values are required
when summa = FALSE..checkInitialValues in the anc parameters..objectiveFunction and predict with std.error.conv_utils.cpp added (contains the convolution general methods).getProbs_directConv, getProbs_minConv; see tests for examples..Rbuildignore in the root directory of the package.gam_weiH and gam_weiA renamed ccX and ccY.dWeibullInterArrivalCountInd and
dWeibullInterArrivalCountFrankCopula improved.cRes object removed from "R/" to free some space.alphagen2 changed to alphagen.renamed alphagen to alphagenOrig.
the signatures of the cpp functions now have namespace prefixes for namespaces
other than Rcpp. In this way RcppExports.cpp does not need using namespace arma which is not included by Rcpp::compileAttributes and
devtools::test() and so needed to be added manually after these calls.
I actually used search and replace to replace occurences in the body of the functions in our cpp files, but since we can put the 'using namespace' directives in them, only the signatures of exported functions are important for the abovde purpose.
replaced std::cout with calls to Rprintf() in C++ code, since direct printing from C++ inside R can cause problems (and is caught by R CMD check). Also removed <iostream.